SAM3X8E - Setting GPNVM bits while running from bank 1

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Hello all,

 

I am hoping to get more input on the following problem:

https://forum.arduino.cc/index.php?topic=664539.0

 

To summarize, While running from bank 1 and clearing GPNVM bit 2 just before software reset the SAM3X8E hangs. 

How can I properly code it so that it reboots to bank 0?