I've always used ICCAVR but I'm going to be evaluating XMEGA via the XMEGA Xplained board, and its code examples are all in IAR/GCC-AVR, so I'm familiarizing myself with WinAVR, since I run Windows and not Linux.
On SourceForge (http://sourceforge.net/projects/winavr/), the latest download for WinAVR is dated 1/20/10, which seems like a long time for something like this to go without an update, though the page was last updated on 7/7/11. Is this truly the latest build?