I have a couple of isses with using AVRStudio's programmer (both V6.2 SP2 and V7) in a second extended desktop monitor.
The first is the AVRISP mkII I'm using disconnects at the end of programming and is a pain to reconnect, it sometimes takes many
connect attempts before I can program again.
The second is that I get BSODs when running the programmer (and AVR Studio, again both versions) in a second extended desktop monitor.
This is a very regular occurance, but I've not seen it happen if I use the primary monitor. It appears to be USB driver (Jungo?) related.
I don't know whether the dual monitor setup is a factor, only that I haven't seen BSODs when using the primary monitor.
Anyone else having issues like these?