I had to use avrdude for our production site. I created a GUI using python.
Issue is that the verification always fails and the controller doesnt work after programming.
Same controller when I programmed using the Atmel Studio from the same Atmel ICE it works just fine.
programmer: ATMEL ICE
avrdude.exe -e -p m128rfa1 -P usb -c atmelice -U lfuse:w:0xe2:m -U hfuse:w:0x90:m -U efuse:w:0xff:m -U flash:w:D:/HEXFile.hex:i
avrdude.exe: verifying ...
avrdude.exe: verification error, first mismatch at byte 0x0002
0x02 != 0x52
avrdude.exe: verification error; content mismatch