Atmel Studio V7 freezing while debugging with jtagice mk2

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I'm working with AtmelStudio V7.0.1417 and ARVJtagICE MK2. Quite often the ice seems to lose connection to my PC. If that happens Atmel Studio is frozen. Waiting for timeout gives me access to Atmel Studio, but when I hit "Start Debugging and Break" Atmel Studio freezes again, or shows error mssage "Debugging is stopped but is not complete", or says "running" and Atmel Studio isn't responding to any command until timeout.

My system is Win7 with all updates (Win NT 6.1 7601 Service Pack1 (Platform Win32NT)

jtagice Master and Slave V7.27, Hardware V0, Slave V1.

Any help would be appreciated.